柳纯洁
EDUCATION
- 2014.09 ~ 2018.06, Ph.D, Genetics
HUST, Wuhan, China
- 2016.10 ~ 2017.10, Visiting Scholar, Computational Biology and Bioinformatics
UTHealth, Texas, U.S.
- 2010.09 ~ 2014.06, B.S., Bioinformatics
HUST, Wuhan, China
RESEARCH EXPIERENCE
- 2021.10 ~ present, Postdoctoral Fellow, CHOP, Advisor: Yi Xing
- 2018.06 ~ 2021.10, Postdoctoral Fellow, HUST, Advisor: An-Yuan Guo
Publications
- More publications can be found in Google Scholar
- Liu, C.J., Xie, GY., Miao, YR., Xia, M., Wang, Y., Lei, Q., Zhang, Q., & Guo, AY. (2022).
EVAtlas: a comprehensive database for ncRNA expression in human extracellular vesicles. Nucleic acids
research. 50 (D1), D111-D117
- Hu, FF., Chen, H., Duan, Y., Lan, B., Liu, C.J., Hu, H., Dong, X., Zhang, Q., & ... (2022).
CBX2 and EZH2 cooperatively promote the growth and metastasis of lung adenocarcinoma. Molecular
Therapy-Nucleic Acids. 27, 670-684
- Luo, M., Ye, L., Chang, R., Ye, Y., Zhang, Z., Liu, C., Li, S., Jing, Y., Ruan, H., & ... (2022). Multi-omics
characterization of autophagy-related molecular features for therapeutic targeting of autophagy. Nature
Communications. 13 (1), 1-17
- Xie, GY., Liu, C.J., Miao, YR., Xia, M., Zhang, Q., & Guo, AY. (2022). A comprehensive
platelet expression atlas (PEA) resource and platelet transcriptome landscape. American journal of
hematology. 97 (1), E18-E21
- Zhang, C., Liu, C.J., & Feng, W. (2022). A Long‐Term Clearing Cranial Window for Longitudinal
Imaging of Cortical and Calvarial Ischemic Injury through the Intact Skull. Advanced Science. 2105893
- Gao, Y., Liu, C.J., Li, HY., Xiong, XM., Li, GL., Veld, SGJG In‘t., Cai, GY., Xie, GY., & ...
(2022). Platelet RNA enables accurate detection of ovarian cancer: an intercontinental, biomarker identification
study. Protein & Cell.
- Miao, YR., Liu, C.J., Hu, H., Yang, M., & Guo, AY. (2022). Biological Pathway-Derived TMB
Robustly Predicts the Outcome of Immune Checkpoint Blockade Therapy. Cells. 11 (18), 2802
- Xie, GY., Liu, C.J., & Guo, AY. (2022). EVAtool: an optimized reads assignment tool for small
ncRNA quantification and its application in extracellular vesicle datasets. Briefings in
Bioinformatics. 23 (5), bbac310
- Gao, Y., Liu, C.J., Li, HY., Xiong, XM., Veld, SG In ‘t., Li, GL., Liu, JH., Cai, GY., & ...
(2022). Abstract LB168: Platelet RNA signature enables early and accurate detection of ovarian cancer: An
intercontinental, biomarker identification study. Cancer Research. 82 (12_Supplement), LB168-LB168
- (2021). Database resources of the national genomics data center, china national center for bioinformation in
2021. Nucleic acids research. 49 (D1), D18-D28
- Hu, FF., Liu, C.J., Liu, LL., Zhang, Q., & Guo, AY. (2021). Expression profile of immune
checkpoint genes and their roles in predicting immunotherapy response. Briefings in bioinformatics. 22
(3), bbaa176
- Liu, C.J., Fu, X., Xia, M., Zhang, Q., Gu, Z., & Guo, AY. (2021). miRNASNP-v3: a
comprehensive database for SNPs and disease-related variations in miRNAs and miRNA targets. Nucleic acids
research. 49 (D1), D1276-D1281
- Hu, H., Zhang, Q., Hu, FF., Liu, C.J., & Guo, AY. (2021). A comprehensive survey for human
transcription factors on expression, regulation, interaction, phenotype and cancer survival. Briefings in
Bioinformatics. 22 (5), bbab002
- Zhang, Q., Luo, M., Liu, C.J., & Guo, AY. (2021). CCLA: an accurate method and web server for
cancer cell line authentication using gene expression profiles. Briefings in Bioinformatics. 22 (3),
bbaa093
- Zhang, Z., Ruan, H., Liu, C.J., Ye, Y., Gong, J., Diao, L., Guo, AY., & Han, L. (2020). tRic:
a user-friendly data portal to explore the expression landscape of tRNAs in human cancers. RNA biology.
17 (11), 1674-1679
- Chen, SY., Liu, C.J., Zhang, Q., & Guo, AY. (2020). An ultra-sensitive T-cell receptor
detection method for TCR-Seq and RNA-Seq data. Bioinformatics. 36 (15), 4255-4262
- Li, Y., Jiang, L., Wang, L., Wang, C., Liu, C., Guo, A., Liu, M., Zhang, L., Ma, C., & ... (2020). p. His16Arg
of STXBP1 (MUNC18-1) Associated with syntaxin 3B causes autosomal dominant congenital nystagmus. Frontiers
in cell and developmental biology. 8, 591781
- Ruan, H., Xiang, Y., Ko, J., Li, S., Jing, Y., Zhu, X., Ye, Y., Zhang, Z., Mills, T., Feng, J., & ... (2019).
Comprehensive characterization of circular RNAs in~ 1000 human cancer cell lines. Genome medicine. 11
(1), 1-14
- Gong, J., Wan, H., Mei, S., Ruan, H., Zhang, Z., Liu, C., Guo, AY., Diao, L., Miao, X., & ... (2019).
Pancan-meQTL: a database to systematically evaluate the effects of genetic variants on methylation in human
cancer. Nucleic acids research. 47 (D1), D1066-D1072
- Zhang, Q., Hu, H., Chen, SY., Liu, C.J., Hu, FF., Yu, J., Wu, Y., & Guo, AY. (2019).
Transcriptome and regulatory network analyses of CD19-CAR-T immunotherapy for B-ALL. Genomics, proteomics &
bioinformatics. 17 (2), 190-200
- Xia, M., Liu, C.J., Zhang, Q., & Guo, AY. (2019). GEDS: a gene expression display server for
mRNAs, miRNAs and proteins. Cells. 8 (7), 675
- Shi, MW., Zhang, NA., Shi, CP., Liu, C.J., Luo, ZH., Wang, DY., Guo, AY., & Chen, ZX. (2019).
SAGD: a comprehensive sex-associated gene database from transcriptomes. Nucleic acids research. 47
(D1), D835-D840
- Liu, C.J., Hu, FF., Xia, MX., Han, L., Zhang, Q., & Guo, AY. (2018). GSCALite: a web server
for gene set cancer analysis. Bioinformatics. 34 (21), 3771-3772
- Gong, J., Mei, S., Liu, C., Xiang, Y., Ye, Y., Zhang, Z., Feng, J., Liu, R., Diao, L., & ... (2018).
PancanQTL: systematic identification of cis-eQTLs and trans-eQTLs in 33 cancer types. Nucleic acids
research. 46 (D1), D971-D976
- Ye, Y., Xiang, Y., Ozguc, FM., Kim, Y., Liu, C.J., Park, PK., Hu, Q., Diao, L., Lou, Y., &
... (2018). The genomic landscape and pharmacogenomic interactions of clock genes in cancer chronotherapy.
Cell systems. 6 (3), 314-328. e2
- Zhang, Z., Ye, Y., Gong, J., Ruan, H., Liu, C.J., Xiang, Y., Cai, C., Guo, AY., Ling, J., &
... (2018). Global analysis of tRNA and translation factor expression reveals a dynamic landscape of
translational regulation in human cancers. Communications biology. 1 (1), 1-11
- Zhang, Q., Liu, W., Liu, C., Lin, SY., & Guo, AY. (2018). SEGtool: a specifically expressed gene detection
tool and applications in human tissue and single-cell sequencing data. Briefings in bioinformatics. 19
(6), 1325-1336
- Gong, J., Li, Y., Liu, C., Xiang, Y., Guo, A., Lin, C., & Han, L. (2018). Comprehensive analysis of small
nucleolar RNAs across in human cancers. Cancer Research. 78 (13 Supplement), 3279-3279
- Gong, J., Li, Y., Liu, C., Xiang, Y., Li, C., Ye, Y., Zhang, Z., Hawke, DH., Park, PK., & ... (2017). A
pan-cancer analysis of the expression and clinical relevance of small nucleolar RNAs in human cancer. Cell
reports. 21 (7), 1968-1981
- Gong, J., Liu, C., Liu, W., Xiang, Y., Diao, L., Guo, AY., & Han, L. (2017). LNCediting: a database for
functional effects of RNA editing in lncRNAs. Nucleic acids research. 45 (D1), D79-D84
- Liu, C.J., Gao, C., Cong, R., Zhang, Q., & Guo, AY. (2017). lncRInter: a database of
experimentally validated long non-coding RNA interaction. Journal of genetics and genomics. 44 (5),
265-268
- Zhao, A., Kong, F., Liu, C.J., Yan, G., Gao, F., Guo, H., Guo, AY., Chen, Z., & Li, Q.
(2017). Tumor cell-derived microvesicles induced not epithelial-mesenchymal transition but apoptosis in human
proximal tubular (HK-2) cells: implications for renal impairment in …. International journal of molecular
sciences. 18 (3), 513
- Wang, J., Liu, Y., Liu, F., Huang, C., Han, S., Lv, Y., Liu, C.J., Zhang, S., Qin, Y., & ...
(2016). Loss-of-function mutation in PMVK causes autosomal dominant disseminated superficial porokeratosis.
Scientific reports. 6 (1), 1-9
- Gao, M., Zhang, S., Liu, C., Qin, Y., Archacki, S., Jin, L., Wang, Y., Liu, F., Chen, J., & ... (2016). Whole
exome sequencing identifies a novel NRL mutation in a Chinese family with autosomal dominant retinitis
pigmentosa. Molecular Vision. 22, 234
- Zhang, HM., Liu, T., Liu, C.J., Song, S., Zhang, X., Liu, W., Jia, H., Xue, Y., & Guo, AY.
(2015). AnimalTFDB 2.0: a resource for expression, prediction and functional study of animal transcription
factors. Nucleic acids research. 43 (D1), D76-D81
- Gong, J., Liu, C., Liu, W., Wu, Y., Ma, Z., Chen, H., & Guo, AY. (2015). An update of miRNASNP database for
better SNP selection by GWAS data, miRNA expression and online tools. Database. 2015
- Lin, Y., Zhang, Q., Zhang, HM., Liu, W., Liu, C.J., Li, Q., & Guo, AY. (2015). Transcription
factor and miRNA co-regulatory network reveals shared and specific regulators in the development of B cell and T
cell. Scientific reports. 5 (1), 1-9