Seq data interface

• RNA-seq
  • Importing DESeq2 Recount2
  • Batch effect
• miRNA-seq
• Metabolism
• Methylation

Machine/Deep Learning interface

MLR, Caret, H2O

• Regression model
• Two class classification
• Multiclass classification
• Survival model
• Cluster analysis
• Parallel

Shiny package/server

• Shiny webserver
• Shiny bioconductor package

Abortion

PIVOT is a great R package for integrative analysis and visualization of transcriptomics data.