EDUCATION

• 2014.09 ~ 2018.06, Ph.D, Genetics
  HUST, Wuhan, China
• 2016.10 ~ 2017.10, Visiting Scholar, Computational Biology and Bioinformatics
  UTHealth, Texas, U.S.
• 2010.09 ~ 2014.06, B.S., Bioinformatics
  HUST, Wuhan, China

Publications

1. More publications can be found in Google Scholar

1. Liu, C.J., Xie, GY., Miao, YR., Xia, M., Wang, Y., Lei, Q., Zhang, Q., & Guo, AY. (2022). EVAtlas: a comprehensive database for ncRNA expression in human extracellular vesicles. Nucleic acids research. 50 (D1), D111-D117
2. Hu, FF., Chen, H., Duan, Y., Lan, B., Liu, C.J., Hu, H., Dong, X., Zhang, Q., & ... (2022). CBX2 and EZH2 cooperatively promote the growth and metastasis of lung adenocarcinoma. Molecular Therapy-Nucleic Acids. 27, 670-684
3. Luo, M., Ye, L., Chang, R., Ye, Y., Zhang, Z., Liu, C., Li, S., Jing, Y., Ruan, H., & ... (2022). Multi-omics characterization of autophagy-related molecular features for therapeutic targeting of autophagy. Nature Communications. 13 (1), 1-17
4. Xie, GY., Liu, C.J., Miao, YR., Xia, M., Zhang, Q., & Guo, AY. (2022). A comprehensive platelet expression atlas (PEA) resource and platelet transcriptome landscape. American journal of hematology. 97 (1), E18-E21
5. Zhang, C., Liu, C.J., & Feng, W. (2022). A Long‐Term Clearing Cranial Window for Longitudinal Imaging of Cortical and Calvarial Ischemic Injury through the Intact Skull. Advanced Science. 2105893
6. Gao, Y., Liu, C.J., Li, HY., Xiong, XM., Li, GL., Veld, SGJG In‘t., Cai, GY., Xie, GY., & ... (2022). Platelet RNA enables accurate detection of ovarian cancer: an intercontinental, biomarker identification study. Protein & Cell.
7. Miao, YR., Liu, C.J., Hu, H., Yang, M., & Guo, AY. (2022). Biological Pathway-Derived TMB Robustly Predicts the Outcome of Immune Checkpoint Blockade Therapy. Cells. 11 (18), 2802
8. Xie, GY., Liu, C.J., & Guo, AY. (2022). EVAtool: an optimized reads assignment tool for small ncRNA quantification and its application in extracellular vesicle datasets. Briefings in Bioinformatics. 23 (5), bbac310
9. Gao, Y., Liu, C.J., Li, HY., Xiong, XM., Veld, SG In ‘t., Li, GL., Liu, JH., Cai, GY., & ... (2022). Abstract LB168: Platelet RNA signature enables early and accurate detection of ovarian cancer: An intercontinental, biomarker identification study. Cancer Research. 82 (12_Supplement), LB168-LB168
10. (2021). Database resources of the national genomics data center, china national center for bioinformation in 2021. Nucleic acids research. 49 (D1), D18-D28
11. Hu, FF., Liu, C.J., Liu, LL., Zhang, Q., & Guo, AY. (2021). Expression profile of immune checkpoint genes and their roles in predicting immunotherapy response. Briefings in bioinformatics. 22 (3), bbaa176
12. Liu, C.J., Fu, X., Xia, M., Zhang, Q., Gu, Z., & Guo, AY. (2021). miRNASNP-v3: a comprehensive database for SNPs and disease-related variations in miRNAs and miRNA targets. Nucleic acids research. 49 (D1), D1276-D1281
13. Hu, H., Zhang, Q., Hu, FF., Liu, C.J., & Guo, AY. (2021). A comprehensive survey for human transcription factors on expression, regulation, interaction, phenotype and cancer survival. Briefings in Bioinformatics. 22 (5), bbab002
14. Zhang, Q., Luo, M., Liu, C.J., & Guo, AY. (2021). CCLA: an accurate method and web server for cancer cell line authentication using gene expression profiles. Briefings in Bioinformatics. 22 (3), bbaa093
15. Zhang, Z., Ruan, H., Liu, C.J., Ye, Y., Gong, J., Diao, L., Guo, AY., & Han, L. (2020). tRic: a user-friendly data portal to explore the expression landscape of tRNAs in human cancers. RNA biology. 17 (11), 1674-1679
16. Chen, SY., Liu, C.J., Zhang, Q., & Guo, AY. (2020). An ultra-sensitive T-cell receptor detection method for TCR-Seq and RNA-Seq data. Bioinformatics. 36 (15), 4255-4262
17. Li, Y., Jiang, L., Wang, L., Wang, C., Liu, C., Guo, A., Liu, M., Zhang, L., Ma, C., & ... (2020). p. His16Arg of STXBP1 (MUNC18-1) Associated with syntaxin 3B causes autosomal dominant congenital nystagmus. Frontiers in cell and developmental biology. 8, 591781
18. Ruan, H., Xiang, Y., Ko, J., Li, S., Jing, Y., Zhu, X., Ye, Y., Zhang, Z., Mills, T., Feng, J., & ... (2019). Comprehensive characterization of circular RNAs in~ 1000 human cancer cell lines. Genome medicine. 11 (1), 1-14
19. Gong, J., Wan, H., Mei, S., Ruan, H., Zhang, Z., Liu, C., Guo, AY., Diao, L., Miao, X., & ... (2019). Pancan-meQTL: a database to systematically evaluate the effects of genetic variants on methylation in human cancer. Nucleic acids research. 47 (D1), D1066-D1072
20. Zhang, Q., Hu, H., Chen, SY., Liu, C.J., Hu, FF., Yu, J., Wu, Y., & Guo, AY. (2019). Transcriptome and regulatory network analyses of CD19-CAR-T immunotherapy for B-ALL. Genomics, proteomics & bioinformatics. 17 (2), 190-200
21. Xia, M., Liu, C.J., Zhang, Q., & Guo, AY. (2019). GEDS: a gene expression display server for mRNAs, miRNAs and proteins. Cells. 8 (7), 675
22. Shi, MW., Zhang, NA., Shi, CP., Liu, C.J., Luo, ZH., Wang, DY., Guo, AY., & Chen, ZX. (2019). SAGD: a comprehensive sex-associated gene database from transcriptomes. Nucleic acids research. 47 (D1), D835-D840
23. Liu, C.J., Hu, FF., Xia, MX., Han, L., Zhang, Q., & Guo, AY. (2018). GSCALite: a web server for gene set cancer analysis. Bioinformatics. 34 (21), 3771-3772
24. Gong, J., Mei, S., Liu, C., Xiang, Y., Ye, Y., Zhang, Z., Feng, J., Liu, R., Diao, L., & ... (2018). PancanQTL: systematic identification of cis-eQTLs and trans-eQTLs in 33 cancer types. Nucleic acids research. 46 (D1), D971-D976
25. Ye, Y., Xiang, Y., Ozguc, FM., Kim, Y., Liu, C.J., Park, PK., Hu, Q., Diao, L., Lou, Y., & ... (2018). The genomic landscape and pharmacogenomic interactions of clock genes in cancer chronotherapy. Cell systems. 6 (3), 314-328. e2
26. Zhang, Z., Ye, Y., Gong, J., Ruan, H., Liu, C.J., Xiang, Y., Cai, C., Guo, AY., Ling, J., & ... (2018). Global analysis of tRNA and translation factor expression reveals a dynamic landscape of translational regulation in human cancers. Communications biology. 1 (1), 1-11
27. Zhang, Q., Liu, W., Liu, C., Lin, SY., & Guo, AY. (2018). SEGtool: a specifically expressed gene detection tool and applications in human tissue and single-cell sequencing data. Briefings in bioinformatics. 19 (6), 1325-1336
28. Gong, J., Li, Y., Liu, C., Xiang, Y., Guo, A., Lin, C., & Han, L. (2018). Comprehensive analysis of small nucleolar RNAs across in human cancers. Cancer Research. 78 (13 Supplement), 3279-3279
29. Gong, J., Li, Y., Liu, C., Xiang, Y., Li, C., Ye, Y., Zhang, Z., Hawke, DH., Park, PK., & ... (2017). A pan-cancer analysis of the expression and clinical relevance of small nucleolar RNAs in human cancer. Cell reports. 21 (7), 1968-1981
30. Gong, J., Liu, C., Liu, W., Xiang, Y., Diao, L., Guo, AY., & Han, L. (2017). LNCediting: a database for functional effects of RNA editing in lncRNAs. Nucleic acids research. 45 (D1), D79-D84
31. Liu, C.J., Gao, C., Cong, R., Zhang, Q., & Guo, AY. (2017). lncRInter: a database of experimentally validated long non-coding RNA interaction. Journal of genetics and genomics. 44 (5), 265-268
32. Zhao, A., Kong, F., Liu, C.J., Yan, G., Gao, F., Guo, H., Guo, AY., Chen, Z., & Li, Q. (2017). Tumor cell-derived microvesicles induced not epithelial-mesenchymal transition but apoptosis in human proximal tubular (HK-2) cells: implications for renal impairment in …. International journal of molecular sciences. 18 (3), 513
33. Wang, J., Liu, Y., Liu, F., Huang, C., Han, S., Lv, Y., Liu, C.J., Zhang, S., Qin, Y., & ... (2016). Loss-of-function mutation in PMVK causes autosomal dominant disseminated superficial porokeratosis. Scientific reports. 6 (1), 1-9
34. Gao, M., Zhang, S., Liu, C., Qin, Y., Archacki, S., Jin, L., Wang, Y., Liu, F., Chen, J., & ... (2016). Whole exome sequencing identifies a novel NRL mutation in a Chinese family with autosomal dominant retinitis pigmentosa. Molecular Vision. 22, 234
35. Zhang, HM., Liu, T., Liu, C.J., Song, S., Zhang, X., Liu, W., Jia, H., Xue, Y., & Guo, AY. (2015). AnimalTFDB 2.0: a resource for expression, prediction and functional study of animal transcription factors. Nucleic acids research. 43 (D1), D76-D81
36. Gong, J., Liu, C., Liu, W., Wu, Y., Ma, Z., Chen, H., & Guo, AY. (2015). An update of miRNASNP database for better SNP selection by GWAS data, miRNA expression and online tools. Database. 2015
37. Lin, Y., Zhang, Q., Zhang, HM., Liu, W., Liu, C.J., Li, Q., & Guo, AY. (2015). Transcription factor and miRNA co-regulatory network reveals shared and specific regulators in the development of B cell and T cell. Scientific reports. 5 (1), 1-9